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E-mail : chowhan@seeders.co.kr

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[Contributor 1] Pepper Genome projects ; prof. Choi, Seoul National University

  • The hot pepper genome (Mexican landrace of Capsicum annuum cv. CM334) has been sequenced by an international group of scientists from Korea, Israel and USA. The sequence was published in Nature Genetics in January 2014. The official page for this genome sequences is http://peppergenome.snu.ac.kr/
  • Prof. Choi provided the pepper genome data including genome and gene sequence, track data, and annotation data available to Genome browser.
  • Also resequencing data of 120 recombinant inbred lines (RILs) were used to develop genome browser, SNP database, genetic map (bin map) construction.

[Contributor 2] Pepper resource (materials) ; prof. Kang, Seoul National University

  • Prof. Kang provided the RIL population used to develop genetic map of pepper.
  • 120 recombinant inbred lines (RILs) derived from a cross between the C. annuum cv. Perennial and Dempsey.

Resource Data infomation

Reference genome (version 1.55)

Crops Scientific name Genome size Chromosome number Total length(bp) Gene Loci Final
Pepper Capsicum annuum cv. CM334 2.7 Gb 12 - 172,513 scaffold

NCBI-SRA Resequencing Data

Species name No. of SRA
Capsicum annuum 43
Capsicum annuum var. glabriusculum 3
Capsicum chinense 5
Capsicum frutescens 2
Piper nigrum (black pepper) 1
< * ~June 2016 >

120 RIL Resequencing Data | C.annum Perennial x C.annum Dempsey F7~9

Sample Average length per read (bp) Total length (bp) Genome coverage of 120 RILs No. of Mapped read Mapping rate
120 RILs 101 209,060,048,773 1.32 3,634,819,737 87.75%

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