Login

ID :
PASSWORD :
E-mail : chowhan@seeders.co.kr

Home > Resource


Contributor

International Tomato Genome Sequencing Team

  • Tomato genomeÀ» ¿Ï¼ºÇÏ¿© NatureÁö (2012. 05)¿¡ ¹ßÇ¥ÇÏ¿´°í, ÀÌ´Â Çѱ¹À» Æ÷ÇÔÇÑ ÃÑ 14°³±¹ ¿¬±¸ÆÀÀÌ Çù·ÂÇÑ °á½ÇÀÔ´Ï´Ù. ÇöÀç Sol Genomics Network (http://solgenomics.net)¿Í NCBI(http://www.ncbi.nlm.nih.gov)¸¦ ÅëÇÏ¿© Tomato genomeÀ» Á¦°øÇϰí ÀÖ½À´Ï´Ù.
  • TGsol ³»¿¡¼­ Ç¥ÁØÀ¯Àüü Á¤º¸¸¦ Ȱ¿ëÇÏ¿© Genome browser ±¸Çö¿¡ Ȱ¿ë ÇÏ¿´½À´Ï´Ù.

ÇѰæ´ëÇб³ °­±Ç±Ô ±³¼ö ¿¬±¸ÆÀ

  • ±¹³»¿¡¼­ À°¼ºÇÑ Å丶Åä 4°èÅë Resequencing µ¥ÀÌÅ͸¦ Á¦°ø ÇØ Áּ̽À´Ï´Ù. Á¦°ø ÇØ ÁֽŠÅ丶Åä Resequencing µ¥ÀÌÅÍ·Î TGsol ³» SNP ºÐ¼®¿¡ Ȱ¿ë ÇÏ¿´½À´Ï´Ù.

ºÎ»ê´ëÇб³ ¹Ú¿µÈÆ ±³¼ö ¿¬±¸ÆÀ

  • Sequence Á¤º¸°¡ °ø°³µÈ ÇØ¿Ü ¿ì¼öÀÚ¿ø Á¾ÀÚ¸¦ ¼öÁý ¹× Áõ½ÄÇϰí ÀÖ½À´Ï´Ù. ¶ÇÇÑ ¾à 75Á¾ÀÇ accession Á¾ÀÚ¸¦ È®º¸ÇÏ¿© Ç¥ÇöÇü Á¶»ç¸¦ ÁøÇà Áß ÀÔ´Ï´Ù.

Resource Data infomation

Ç¥ÁØÀ¯Àüü (Reference genome)

Crops Scientific name Genome size Chromosome number Total length(bp) Gene Loci ÃÖÁ¾ÇüÅÂ
Tomato S. Lycopersicum Heinz 1706-BG 950 Mb 12 718,969,627 34,727 chromosome

NCBI-SRA Resequencing Data

Å丶Åä °èÅë ¼öÁý SRA ¼ö ºÐ¼®¿¡ »ç¿ëµÈ SRA ¼ö
Solanum lycopersicum 557 126
Solanum lycopersicum var. cerasiforme 133 126
Solanum pimpinellifolium 65 33
Solanum habrochaites 17 1
Solanum pennellii 14 0
Solanum arcanum 12 0
Solanum huaylasense 3 0
Solanum cheesmaniae 2 2
Solanum chilense 2 1
Solanum chmielewskii 2 0
±âŸ (Solanum neorickii, peruvianum, corneliomuelleri, galapagense) 6 3
Total 813 234
< *2016³â 6¿ù ÇöÀç >

NCBI-SRA Transcriptome Data

Experiment Title Instrument Library Total lenth(bp)
Solanum lycopersicum PI114490 SE RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,809,075,540
Solanum lycopersicum T5 SE RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,708,971,720
Solanum lycopersicum OH9242 SE RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,353,093,900
Solanum lycopersicum NC84173 SE RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,383,236,700
Solanum lycopersicum FL7600 SE RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,702,107,120
Solanum pimpinellifolium PI212816 SE2 RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 1,554,019,740
Solanum pimpinellifolium PI212816 SE1 RNA-Seq Illumina Genome Analyzer IIx RNA-Seq 921,292,920
Solanum lycopersicum trasncriptome sequencing of unpollinated style (M82) 454 GS FLX EST 39,349,666
< *2016³â 6¿ù ÇöÀç >

±¹³» À°¼ºÁ¾(4°èÅë) Resequencing Data

Sample No. of Read Average length per read (bp) Total length (bp) Genome coverage
K1 72,683,850 90.31 ¡Ö8.40x 66,637,536 (91.68%)
K2 75,345,050 91.15 ¡Ö8.79x 68,002,695 (90.26%)
K3 78,327,298 90.79 ¡Ö9.10x 74,696,500 (95.36%)
K4 76,705,424 90.47 ¡Ö8.88x 70,719,624 (92.20%)



Contact Us : help@seeders.co.kr +82 042-710-4025
TGsol is supported by the Next-Generation BioGreen 21 Program, RDA, Republic of Korea.

SEEDERS Inc. is specialized in Agri-Bioinformatics
Republic of Korea, Daejeon, 34015
www.seeders.co.kr
logout